Welcome to the Chocolatey Community Package Repository! The packages found in this section of the site are provided, maintained, and moderated by the community.
Moderation
Every version of each package undergoes a rigorous moderation process before it goes live that typically includes:
- Security, consistency, and quality checking
- Installation testing
- Virus checking through VirusTotal
- Human moderators who give final review and sign off
More detail at Security and Moderation.
Organizational Use
If you are an organization using Chocolatey, we want your experience to be fully reliable. Due to the nature of this publicly offered repository, reliability cannot be guaranteed. Packages offered here are subject to distribution rights, which means they may need to reach out further to the internet to the official locations to download files at runtime.
Fortunately, distribution rights do not apply for internal use. With any edition of Chocolatey (including the free open source edition), you can host your own packages and cache or internalize existing community packages.
Disclaimer
Your use of the packages on this site means you understand they are not supported or guaranteed in any way. Learn more...
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Downloads:
79,040
Downloads of v 14.18.1:
2,323
Last Update:
12 Jun 2017
Package Maintainer(s):
Software Author(s):
- The Jmol Development Team
Tags:
jmol chemistry molecule rendering viewer java
Jmol molecule viewer
This is not the latest version of Jmol molecule viewer available.
Downloads:
79,040
Downloads of v 14.18.1:
2,323
Maintainer(s):
Software Author(s):
- The Jmol Development Team
Edit Package
To edit the metadata for a package, please upload an updated version of the package.
Chocolatey's Community Package Repository currently does not allow updating package metadata on the website. This helps ensure that the package itself (and the source used to build the package) remains the one true source of package metadata.
This does require that you increment the package version.
Jmol molecule viewer 14.18.1
This is not the latest version of Jmol molecule viewer available.
All Checks are Passing
2 Passing Test
To install Jmol molecule viewer, run the following command from the command line or from PowerShell:
To upgrade Jmol molecule viewer, run the following command from the command line or from PowerShell:
To uninstall Jmol molecule viewer, run the following command from the command line or from PowerShell:
NOTE: This applies to both open source and commercial editions of Chocolatey.
1. Ensure you are set for organizational deployment
Please see the organizational deployment guide
2. Get the package into your environment-
Open Source or Commercial:
- Proxy Repository - Create a proxy nuget repository on Nexus, Artifactory Pro, or a proxy Chocolatey repository on ProGet. Point your upstream to https://chocolatey.org/api/v2. Packages cache on first access automatically. Make sure your choco clients are using your proxy repository as a source and NOT the default community repository. See source command for more information.
- You can also just download the package and push it to a repository Download
-
Open Source
- Download the Package Download
- Follow manual internalization instructions
-
Package Internalizer (C4B)
- Run
choco download jmol --internalize --version=14.18.1 --source=https://chocolatey.org/api/v2
(additional options) - Run
choco push --source="'http://internal/odata/repo'"
for package and dependencies - Automate package internalization
- Run
3. Enter your internal repository url
(this should look similar to https://chocolatey.org/api/v2)
4. Choose your deployment method:
choco upgrade jmol -y --source="'STEP 3 URL'" [other options]
See options you can pass to upgrade.
See best practices for scripting.
Add this to a PowerShell script or use a Batch script with tools and in places where you are calling directly to Chocolatey. If you are integrating, keep in mind enhanced exit codes.
If you do use a PowerShell script, use the following to ensure bad exit codes are shown as failures:
choco upgrade jmol -y --source="'STEP 3 URL'"
$exitCode = $LASTEXITCODE
Write-Verbose "Exit code was $exitCode"
$validExitCodes = @(0, 1605, 1614, 1641, 3010)
if ($validExitCodes -contains $exitCode) {
Exit 0
}
Exit $exitCode
- name: Ensure jmol installed
win_chocolatey:
name: jmol
state: present
version: 14.18.1
source: STEP 3 URL
See docs at https://docs.ansible.com/ansible/latest/modules/win_chocolatey_module.html.
Coming early 2020! Central Managment Reporting available now! More information...
chocolatey_package 'jmol' do
action :install
version '14.18.1'
source 'STEP 3 URL'
end
See docs at https://docs.chef.io/resource_chocolatey_package.html.
Chocolatey::Ensure-Package
(
Name: jmol,
Version: 14.18.1,
Source: STEP 3 URL
);
Requires Otter Chocolatey Extension. See docs at https://inedo.com/den/otter/chocolatey.
cChocoPackageInstaller jmol
{
Name = 'jmol'
Ensure = 'Present'
Version = '14.18.1'
Source = 'STEP 3 URL'
}
Requires cChoco DSC Resource. See docs at https://github.com/chocolatey/cChoco.
package { 'jmol':
provider => 'chocolatey',
ensure => '14.18.1',
source => 'STEP 3 URL',
}
Requires Puppet Chocolatey Provider module. See docs at https://forge.puppet.com/puppetlabs/chocolatey.
salt '*' chocolatey.install jmol version="14.18.1" source="STEP 3 URL"
See docs at https://docs.saltstack.com/en/latest/ref/modules/all/salt.modules.chocolatey.html.
5. If applicable - Chocolatey configuration/installation
See infrastructure management matrix for Chocolatey configuration elements and examples.
Private CDN cached downloads available for licensed customers. Never experience 404 breakages again! Learn more...
This package was approved as a trusted package on 12 Jun 2017.
Jmol is a free, open source molecule viewer for students, educators, and researchers in chemistry and biochemistry.
Features
- Free, open-source software licensed under the GNU Lesser General Public License
- Applet, Application, and Systems Integration Component*
- Multi-language
- Cross-platform
- Supports all major web browsers: Internet Explorer, Mozilla and Firefox, Safari, Google Chrome, Opera, Konqueror, IceWeasel, ...
- High-performance 3D rendering with no hardware requirements
- File formats (see also the file formats section within Jmol Wiki):
- MOL MDL / Elsevier / Symyx structure (classic version V2000)
- V3000 MDL / Elsevier / Symyx structure (new version V3000)
- SDF MDL / Elsevier / Symyx structure (multiple models)
- CTFile MDL / Elsevier / Symyx chemical table (generic)
- CIF Crystallographic Information File - standard from the International Union of Crystallography
- mmCIF Macromolecular Crystallographic Information File - standard from the International Union of Crystallography
- CML Chemical Markup Language
- PDB Protein Data Bank - Research Collaboratory for Structural Bioinformatics
- XYZ XYZ format, XMol file - Minnesota Supercomputer Institute
- XYZ+vib XYZ format with added vibrational vector information
- XYZ-FAH XYZ format for [email protected]
- MOL2 Sybyl, Tripos
- Alchemy Tripos
- CSF Fujitsu CAChe chemical structure, now Fujitsu Sygress
- GAMESS General Atomic and Molecular Electronic Structure System output (both US and UK variants) - Gordon Research Group, Iowa State University
- Gaussian Gaussian 94/98/03 output - Gaussian, Inc.
- Cube Gaussian, Inc.
- Ghemical The Ghemical computational chemistry package
- MM1GP Ghemical molecular mechanics file
- HIN HIN / HIV files from HyperChem - Hypercube, Inc.
- Jaguar Schrodinger, LLC
- MOLPRO Molpro output
- MOPAC MOPAC 93/97/2002 output (public domain)
- MGF MOPAC 2007 (v.7.101) graphf output (public domain)
- NWCHEM NWChem output - Pacific Northwest National Laboratory
- odydata Odyssey data - WaveFunction, Inc.
- xodydata Odyssey XML data - WaveFunction, Inc.
- QOUT Q-Chem, Inc.
- SHELX Structural Chemistry Department, University of Göttingen (Germany)
- SMOL Spartan data - Wavefunction, Inc.
- spinput Spartan data - Wavefunction, Inc.
- GRO Gromos87 format from GROMACS
- PQR Modified pdb format including charge and radius
- Amber The Amber package of molecular simulation programs
- JME Java Molecular Editor - Peter Ertl
- CASTEP The CASTEP software package, uses density functional theory
- FHI-aims Full-potential / all-electron electronic structure theory with local orbitals - Fritz-Haber-Institut der Max-Planck-Gesellschaft
- VASP VASP / VAMP / Vienna ab-initio simulation package
- DGrid Miroslav Kohout, Max-Planck Institute
- ADF ADF output - Amsterdam Density Functional
- XSD Accelrys Materials Studio
- AGL ArgusLab
- DFT Wien2k
- AMPAC AMPAC output - Semichem, Inc.
- WebMO WebMO interface to computational chemistry packages
- Molden Electron density / molecular orbitals
- PSI3 Output files from the PSI3 suite of quantum chemical programs
- CRYSTAL Output files from CRYSTAL, a computational tool for solid state chemistry and physics. Theoretical Chemistry Group, Univ. Torino, Italy.
- Files which are compressed with gzip will automatically be decompressed
- Animations
- Vibrations
- Surfaces
- Orbitals
- Support for unit cell and symmetry operations
- Schematic shapes for secondary structures in biomolecules
- Measurements of distance, angle, torsion angle
- Support for RasMol/Chime scripting language
- JavaScript support library (Jmol.js)
- Exports to jpg, png, gif, ppm, pdf, POV-Ray, Gaussian, Maya, vrml, x3d, idtf, web page.
$packageName = 'Jmol'
$url = 'https://sourceforge.net/projects/jmol/files/Jmol/Version%2014.18/Jmol%2014.18.1/Jmol-14.18.1-binary.zip'
$Checksum = '93a5b12b0e694274a16fc12d7a2f23bbbdec860c1316da0cace56df6a42fb3b2'
$installDir = Split-Path (Split-Path -parent $script:MyInvocation.MyCommand.Path)
$installArgs = @{
packageName = $packageName
url = $url
Checksum = $Checksum
ChecksumType = 'sha256'
UnzipLocation = $installDir
}
Install-ChocolateyZipPackage @installArgs
$JavaExe = "$env:ProgramData\Oracle\Java\javapath\javaw.exe"
$target = (Get-ChildItem $installDir -filter jmol.jar -Recurse).fullname
$icon = Join-Path $installDir 'tools\Jmol_icon13.ico'
$launcher = Join-Path $installDir 'Jmol Launcher.exe'
$SGpath = Join-Path $env:ChocolateyInstall 'tools\shimgen.exe'
& $SGpath -o $launcher -p $JavaExe -c "-jar '$target'" -i $icon --gui
$shortcut = Join-Path ([Environment]::GetFolderPath("Desktop")) 'Jmol.lnk'
Install-ChocolateyShortcut -ShortcutFilePath $shortcut -TargetPath $launcher -IconLocation $icon
$desktop = [Environment]::GetFolderPath("Desktop")
$shortcut = Join-Path $desktop 'Jmol.lnk'
if ([System.IO.File]::Exists($shortcut)) {
Write-Debug "Found the desktop shortcut. Deleting it..."
[System.IO.File]::Delete($shortcut)
}
Log in or click on link to see number of positives.
- Jmol Launcher.exe (7dcf918519ad) - ## / 58
- jmol.14.18.1.nupkg (4acce31d1fb6) - ## / 56
- jsmol.zip (2233fdd4bcb0) - ## / 59
- Jmol-14.18.1-binary.zip (93a5b12b0e69) - ## / 57
In cases where actual malware is found, the packages are subject to removal. Software sometimes has false positives. Moderators do not necessarily validate the safety of the underlying software, only that a package retrieves software from the official distribution point and/or validate embedded software against official distribution point (where distribution rights allow redistribution).
Chocolatey Pro provides runtime protection from possible malware.
Version | Downloads | Last Updated | Status |
---|---|---|---|
Jmol molecule viewer 14.31.32 | 164 | Sunday, February 14, 2021 | Approved |
Jmol molecule viewer 14.31.28 | 117 | Saturday, January 30, 2021 | Approved |
Jmol molecule viewer 14.31.23 | 127 | Tuesday, January 12, 2021 | Approved |
Jmol molecule viewer 14.31.20 | 112 | Sunday, December 27, 2020 | Approved |
Jmol molecule viewer 14.31.18 | 135 | Friday, November 27, 2020 | Approved |
Jmol molecule viewer 14.31.17 | 123 | Saturday, November 14, 2020 | Approved |
Jmol molecule viewer 14.31.10 | 146 | Sunday, October 25, 2020 | Approved |
Jmol molecule viewer 14.31.9 | 130 | Sunday, October 11, 2020 | Approved |
Jmol molecule viewer 14.31.8 | 124 | Monday, September 28, 2020 | Approved |
Jmol molecule viewer 14.31.4 | 146 | Saturday, September 12, 2020 | Approved |
Jmol molecule viewer 14.31.3 | 119 | Sunday, August 30, 2020 | Approved |
Jmol molecule viewer 14.31.2 | 194 | Sunday, July 19, 2020 | Approved |
Jmol molecule viewer 14.31.0 | 163 | Wednesday, June 10, 2020 | Approved |
Jmol molecule viewer 14.30.2 | 376 | Saturday, February 8, 2020 | Approved |
Jmol molecule viewer 14.30.1 | 236 | Friday, December 20, 2019 | Approved |
Jmol molecule viewer 14.29.54 | 407 | Saturday, October 12, 2019 | Approved |
Jmol molecule viewer 14.29.53 | 218 | Saturday, September 28, 2019 | Approved |
Jmol molecule viewer 14.29.52 | 1486 | Thursday, August 29, 2019 | Approved |
Jmol molecule viewer 14.29.47 | 1789 | Wednesday, July 31, 2019 | Approved |
Jmol molecule viewer 14.29.46 | 740 | Tuesday, June 18, 2019 | Approved |
Jmol molecule viewer 14.29.42 | 6834 | Thursday, May 16, 2019 | Approved |
Jmol molecule viewer 14.29.40 | 3440 | Tuesday, April 30, 2019 | Approved |
Jmol molecule viewer 14.29.36 | 3703 | Sunday, April 14, 2019 | Approved |
Jmol molecule viewer 14.29.34 | 765 | Thursday, April 11, 2019 | Approved |
Jmol molecule viewer 14.29.31 | 8681 | Tuesday, March 5, 2019 | Approved |
Jmol molecule viewer 14.29.29 | 5781 | Friday, November 30, 2018 | Approved |
Jmol molecule viewer 14.29.28 | 276 | Thursday, November 1, 2018 | Approved |
Jmol molecule viewer 14.29.26 | 239 | Friday, October 12, 2018 | Approved |
Jmol molecule viewer 14.29.22 | 659 | Monday, September 17, 2018 | Approved |
Jmol molecule viewer 14.29.17 | 9208 | Friday, June 22, 2018 | Approved |
Jmol molecule viewer 14.29.16 | 252 | Friday, June 15, 2018 | Approved |
Jmol molecule viewer 14.29.15 | 1513 | Monday, May 28, 2018 | Approved |
Jmol molecule viewer 14.29.14 | 257 | Friday, May 18, 2018 | Approved |
Jmol molecule viewer 14.29.13 | 4094 | Tuesday, April 24, 2018 | Approved |
Jmol molecule viewer 14.29.12 | 3479 | Thursday, April 5, 2018 | Approved |
Jmol molecule viewer 14.29.5 | 7001 | Monday, February 12, 2018 | Approved |
Jmol molecule viewer 14.28.3 | 334 | Thursday, January 25, 2018 | Approved |
Jmol molecule viewer 14.28.2 | 281 | Wednesday, January 17, 2018 | Approved |
Jmol molecule viewer 14.27.2 | 353 | Friday, December 22, 2017 | Approved |
Jmol molecule viewer 14.25.2 | 642 | Friday, December 1, 2017 | Approved |
Jmol molecule viewer 14.21.1 | 370 | Tuesday, October 24, 2017 | Approved |
Jmol molecule viewer 14.20.8 | 301 | Thursday, October 19, 2017 | Approved |
Jmol molecule viewer 14.20.7 | 321 | Thursday, October 5, 2017 | Approved |
Jmol molecule viewer 14.20.6 | 321 | Tuesday, September 19, 2017 | Approved |
Jmol molecule viewer 14.20.5 | 791 | Friday, September 1, 2017 | Approved |
Jmol molecule viewer 14.20.3 | 2371 | Tuesday, August 1, 2017 | Approved |
Jmol molecule viewer 14.18.1 | 2323 | Monday, June 12, 2017 | Approved |
Jmol molecule viewer 14.17.1 | 774 | Friday, June 2, 2017 | Approved |
Jmol molecule viewer 14.15.2 | 2529 | Wednesday, May 3, 2017 | Approved |
Jmol molecule viewer 14.9.1 | 1968 | Wednesday, March 8, 2017 | Approved |
Jmol molecule viewer 14.8.0 | 903 | Tuesday, January 31, 2017 | Approved |
Jmol molecule viewer 14.6.1.20160811 | 905 | Thursday, August 18, 2016 | Approved |
Jmol 14.4.4 | 319 | Friday, April 22, 2016 | Approved |
Copyright © 1998-2016 The Jmol Development Team
-
- jre8 (≥ 8.0)
Ground Rules:
- This discussion is only about Jmol molecule viewer and the Jmol molecule viewer package. If you have feedback for Chocolatey, please contact the Google Group.
- This discussion will carry over multiple versions. If you have a comment about a particular version, please note that in your comments.
- The maintainers of this Chocolatey Package will be notified about new comments that are posted to this Disqus thread, however, it is NOT a guarantee that you will get a response. If you do not hear back from the maintainers after posting a message below, please follow up by using the link on the left side of this page or follow this link to contact maintainers. If you still hear nothing back, please follow the package triage process.
- Tell us what you love about the package or Jmol molecule viewer, or tell us what needs improvement.
- Share your experiences with the package, or extra configuration or gotchas that you've found.
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