Unpacking Software Livestream

Join our monthly Unpacking Software livestream to hear about the latest news, chat and opinion on packaging, software deployment and lifecycle management!

Learn More

Chocolatey Product Spotlight

Join the Chocolatey Team on our regular monthly stream where we put a spotlight on the most recent Chocolatey product releases. You'll have a chance to have your questions answered in a live Ask Me Anything format.

Learn More

Chocolatey Coding Livestream

Join us for the Chocolatey Coding Livestream, where members of our team dive into the heart of open source development by coding live on various Chocolatey projects. Tune in to witness real-time coding, ask questions, and gain insights into the world of package management. Don't miss this opportunity to engage with our team and contribute to the future of Chocolatey!

Learn More

Calling All Chocolatiers! Whipping Up Windows Automation with Chocolatey Central Management

Webinar from
Wednesday, 17 January 2024

We are delighted to announce the release of Chocolatey Central Management v0.12.0, featuring seamless Deployment Plan creation, time-saving duplications, insightful Group Details, an upgraded Dashboard, bug fixes, user interface polishing, and refined documentation. As an added bonus we'll have members of our Solutions Engineering team on-hand to dive into some interesting ways you can leverage the new features available!

Watch On-Demand
Chocolatey Community Coffee Break

Join the Chocolatey Team as we discuss all things Community, what we do, how you can get involved and answer your Chocolatey questions.

Watch The Replays
Chocolatey and Intune Overview

Webinar Replay from
Wednesday, 30 March 2022

At Chocolatey Software we strive for simple, and teaching others. Let us teach you just how simple it could be to keep your 3rd party applications updated across your devices, all with Intune!

Watch On-Demand
Chocolatey For Business. In Azure. In One Click.

Livestream from
Thursday, 9 June 2022

Join James and Josh to show you how you can get the Chocolatey For Business recommended infrastructure and workflow, created, in Azure, in around 20 minutes.

Watch On-Demand
The Future of Chocolatey CLI

Livestream from
Thursday, 04 August 2022

Join Paul and Gary to hear more about the plans for the Chocolatey CLI in the not so distant future. We'll talk about some cool new features, long term asks from Customers and Community and how you can get involved!

Watch On-Demand
Hacktoberfest Tuesdays 2022

Livestreams from
October 2022

For Hacktoberfest, Chocolatey ran a livestream every Tuesday! Re-watch Cory, James, Gary, and Rain as they share knowledge on how to contribute to open-source projects such as Chocolatey CLI.

Watch On-Demand

Downloads:

6,495

Downloads of v 1.3.0.5938:

148

Last Update:

01 Nov 2019

Package Maintainer(s):

Software Author(s):

  • Oleg Dolomanov
  • Horst Puschmann

Tags:

olex2 crystallography chemistry

Olex²

This is not the latest version of Olex² available.

  • 1
  • 2
  • 3

1.3.0.5938 | Updated: 01 Nov 2019

Downloads:

6,495

Downloads of v 1.3.0.5938:

148

Maintainer(s):

Software Author(s):

  • Oleg Dolomanov
  • Horst Puschmann

Olex² 1.3.0.5938

This is not the latest version of Olex² available.

  • 1
  • 2
  • 3

Some Checks Have Failed or Are Not Yet Complete

Not All Tests Have Passed


Validation Testing Passed


Verification Testing Passed

Details

Scan Testing Resulted in Flagged:

This package was submitted (and approved) prior to automated virus scanning integration into the package moderation processs.

We recommend clicking the "Details" link to make your own decision on installing this package.

Details
Learn More

Deployment Method: Individual Install, Upgrade, & Uninstall

To install Olex², run the following command from the command line or from PowerShell:

>

To upgrade Olex², run the following command from the command line or from PowerShell:

>

To uninstall Olex², run the following command from the command line or from PowerShell:

>

Deployment Method:

NOTE

This applies to both open source and commercial editions of Chocolatey.

1. Enter Your Internal Repository Url

(this should look similar to https://community.chocolatey.org/api/v2/)


2. Setup Your Environment

1. Ensure you are set for organizational deployment

Please see the organizational deployment guide

2. Get the package into your environment

  • Open Source or Commercial:
    • Proxy Repository - Create a proxy nuget repository on Nexus, Artifactory Pro, or a proxy Chocolatey repository on ProGet. Point your upstream to https://community.chocolatey.org/api/v2/. Packages cache on first access automatically. Make sure your choco clients are using your proxy repository as a source and NOT the default community repository. See source command for more information.
    • You can also just download the package and push it to a repository Download

3. Copy Your Script

choco upgrade olex2 -y --source="'INTERNAL REPO URL'" --version="'1.3.0.5938'" [other options]

See options you can pass to upgrade.

See best practices for scripting.

Add this to a PowerShell script or use a Batch script with tools and in places where you are calling directly to Chocolatey. If you are integrating, keep in mind enhanced exit codes.

If you do use a PowerShell script, use the following to ensure bad exit codes are shown as failures:


choco upgrade olex2 -y --source="'INTERNAL REPO URL'" --version="'1.3.0.5938'" 
$exitCode = $LASTEXITCODE

Write-Verbose "Exit code was $exitCode"
$validExitCodes = @(0, 1605, 1614, 1641, 3010)
if ($validExitCodes -contains $exitCode) {
  Exit 0
}

Exit $exitCode

- name: Install olex2
  win_chocolatey:
    name: olex2
    version: '1.3.0.5938'
    source: INTERNAL REPO URL
    state: present

See docs at https://docs.ansible.com/ansible/latest/modules/win_chocolatey_module.html.


chocolatey_package 'olex2' do
  action    :install
  source   'INTERNAL REPO URL'
  version  '1.3.0.5938'
end

See docs at https://docs.chef.io/resource_chocolatey_package.html.


cChocoPackageInstaller olex2
{
    Name     = "olex2"
    Version  = "1.3.0.5938"
    Source   = "INTERNAL REPO URL"
}

Requires cChoco DSC Resource. See docs at https://github.com/chocolatey/cChoco.


package { 'olex2':
  ensure   => '1.3.0.5938',
  provider => 'chocolatey',
  source   => 'INTERNAL REPO URL',
}

Requires Puppet Chocolatey Provider module. See docs at https://forge.puppet.com/puppetlabs/chocolatey.


4. If applicable - Chocolatey configuration/installation

See infrastructure management matrix for Chocolatey configuration elements and examples.

Package Approved

This package was approved as a trusted package on 01 Nov 2019.

Description

Olex² is a simple to use program containing numerous tools for the structure analysis and publication, including Fourier maps and voids calculation and visualisation, space group determination, calculation of esd's for almost any possible geometrical parameters, CIF translation to HTML and other documents, hydrogen atom placement and many others. The graphical user interface is the result of 10 years of striving to provide the best possible experience to modelling even the most challenging structures with ease. The software originated at Durham University and has been in active development since 2004.

Features

  • Stereo visualisation
  • Full history of the structure - from solution - to the refinement
  • Structure analysis - pi-pi and other interactions, easy s.u. (esd) on many geometrical parameters calculation
  • Own olex2.refine structure refinement module
  • Seamless integration with Shelxl - switch between Shelxl and olex2.refine in no time
  • Integration with Platon software - every knowledge Platon has is unlocked
  • Multi-platform Windows-Linux-Mac (thanks to wxWidgets)
  • Superflip GUI, ShelXT, Sir and other structure solution programs at the push of the button
  • Postscript and bitmap (jpg, png etc) output to high resolution
  • Advanced tools for disorder modelling using rigid body refinemet
  • Structure reports (and CIF) - by managing metadata are always up to date even after a new structure solution!
  • Electron density maps (and they are live for contour maps)
  • Numerous drawing styles, including a few of predefined
  • Customisable main Menu and the GUI toolbar
  • Embedded Python and macro binding to the command line or interface elements

Install Options

By default, this package deposits Olex² in C:\ProgramData\ and will not install a desktop icon.

  • /Icon - Installs the desktop icon.
  • /INSTALLDIR: - Deposits Olex² to a directory you specify

Example usage: choco install olex2 -params '"/INSTALLDIR:""c:\Program Files"""'
(note: the double-double quotes around the path are only needed if it contains spaces)


tools\chocolateyinstall.ps1
$ErrorActionPreference = 'Stop'

$url32       = 'http://www.olex2.org/olex2-distro/1.3/olex2-win32.zip'
$url64       = 'http://www.olex2.org/olex2-distro/1.3/olex2-win64.zip'
$checkSum32  = '47d7ba2ecf5eef54f06af994def8de344194fe609c7155f0afa64f85f2b9a0b1'
$checkSum64  = '57efed2e0e890c834d1b0fd1fac97e656225cd1841a4d08d0d7ee6f9979d38b7'

$DisplayedVersion = $env:ChocolateyPackageVersion.split('.')[0-1] -join '.'

$pp = Get-PackageParameters
if ($pp['INSTALLDIR']) { 
   Write-Host 'You have opted to install to an alternate location.' -ForegroundColor Cyan
   if (Test-Path $pp['INSTALLDIR']) {
      $InstallDir = Join-Path $pp['INSTALLDIR'] "$env:ChocolateyPackageName-$DisplayedVersion"
   } else { Throw "Path '$($pp['INSTALLDIR'])' does not exist!" }
} else {
   $InstallDir = Join-Path $env:ProgramData "$env:ChocolateyPackageName-$DisplayedVersion"
}

$InstallArgs = @{
   PackageName   = $env:ChocolateyPackageName
   Url           = $url32
   Url64         = $url64
   UnzipLocation = $InstallDir
   checkSum      = $checkSum32
   checkSum64    = $checkSum64
   checkSumType  = 'sha256'
}
Install-ChocolateyZipPackage @InstallArgs

$ShortcutName = "Olex2-$DisplayedVersion.lnk"
$targetPath = (Get-ChildItem $InstallDir -filter "$env:ChocolateyPackageName.exe").fullname
$DeskShortcut = Join-Path "$env:PUBLIC\Desktop" $ShortcutName
$StartShortcut = Join-Path $env:ProgramData "Microsoft\Windows\Start Menu\Programs\$ShortcutName"

Install-ChocolateyShortcut -ShortcutFilePath $StartShortcut -TargetPath $targetPath

if ($pp['Icon']) { 
   Write-Host 'You have opted for the Desktop Icon.' -ForegroundColor Cyan
   Install-ChocolateyShortcut -ShortcutFilePath $DeskShortcut -TargetPath $targetPath
}
tools\chocolateyUninstall.ps1
$ErrorActionPreference = 'Stop'

$DisplayedVersion = $env:ChocolateyPackageVersion.split('.')[0-1] -join '.'

$UnzipLog = Get-ChildItem $env:ChocolateyPackageFolder -Filter "*.zip.txt" |
                  Sort-Object creationtime | Select-Object -last 1
If ($UnzipLog) {
   $InstallDir = Get-Content $UnzipLog.FullName | Select-Object -First 1
} else {
   $InstallDir = Join-Path $env:ProgramData "$env:ChocolateyPackageName-$DisplayedVersion"
}

$ShortcutName = "Olex2-$DisplayedVersion.lnk"
$DeskShortcut = Join-Path "$env:PUBLIC\Desktop" $ShortcutName
$StartShortcut = Join-Path $env:ProgramData "Microsoft\Windows\Start Menu\Programs\$ShortcutName"

if ([System.IO.File]::Exists($DeskShortcut)) {
    Write-Debug "Found the desktop shortcut. Deleting it..."
    [System.IO.File]::Delete($DeskShortcut)
}

if ([System.IO.File]::Exists($StartShortcut)) {
    Write-Debug "Found the Start Menu shortcut. Deleting it..."
    [System.IO.File]::Delete($StartShortcut)
}

if (Test-Path $InstallDir) {
    Write-Debug "Found the Install Directory. Deleting it..."
      Remove-Item $InstallDir -Recurse -Force
}

Log in or click on link to see number of positives.

In cases where actual malware is found, the packages are subject to removal. Software sometimes has false positives. Moderators do not necessarily validate the safety of the underlying software, only that a package retrieves software from the official distribution point and/or validate embedded software against official distribution point (where distribution rights allow redistribution).

Chocolatey Pro provides runtime protection from possible malware.

Add to Builder Version Downloads Last Updated Status
Olex² 1.3.0.6272 151 Sunday, March 7, 2021 Approved
Olex² 1.3.0.6257 100 Sunday, February 14, 2021 Approved
Olex² 1.3.0.6226 124 Saturday, December 12, 2020 Approved
Olex² 1.3.0.6145 194 Saturday, August 1, 2020 Approved
Olex² 1.3.0.6032 270 Sunday, March 8, 2020 Approved
Olex² 1.3.0.6003 200 Friday, December 20, 2019 Approved
Olex² 1.3.0.5938 148 Friday, November 1, 2019 Approved
Olex² 1.2.10.5506 160 Tuesday, October 29, 2019 Approved
Olex² 1.2.8.5506 550 Saturday, June 2, 2018 Approved
Olex² 1.2.8.5497 262 Monday, May 28, 2018 Approved
Olex² 1.2.8.5492 296 Friday, May 11, 2018 Approved
Olex² 1.2.8.5488 340 Tuesday, April 24, 2018 Approved
Olex² 1.2.8.5486 289 Friday, April 13, 2018 Approved
Olex² 1.2.8.5381 402 Tuesday, September 19, 2017 Approved
Olex² 1.2.8.5370 403 Wednesday, August 2, 2017 Approved
Olex² 1.2.8.5337 386 Friday, June 2, 2017 Approved
Olex² 1.2.8.5335 402 Wednesday, May 3, 2017 Approved
Olex² 1.2.8.5324 389 Friday, March 10, 2017 Approved
Olex² 1.2.8.5292 408 Thursday, February 2, 2017 Approved
Olex² 1.2.8.5289 423 Monday, January 9, 2017 Approved
Olex² 1.2.8 386 Friday, December 23, 2016 Approved

Discussion for the Olex² Package

Ground Rules:

  • This discussion is only about Olex² and the Olex² package. If you have feedback for Chocolatey, please contact the Google Group.
  • This discussion will carry over multiple versions. If you have a comment about a particular version, please note that in your comments.
  • The maintainers of this Chocolatey Package will be notified about new comments that are posted to this Disqus thread, however, it is NOT a guarantee that you will get a response. If you do not hear back from the maintainers after posting a message below, please follow up by using the link on the left side of this page or follow this link to contact maintainers. If you still hear nothing back, please follow the package triage process.
  • Tell us what you love about the package or Olex², or tell us what needs improvement.
  • Share your experiences with the package, or extra configuration or gotchas that you've found.
  • If you use a url, the comment will be flagged for moderation until you've been whitelisted. Disqus moderated comments are approved on a weekly schedule if not sooner. It could take between 1-5 days for your comment to show up.
comments powered by Disqus