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OpenChrom Community Edition

1.3.0

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This package was approved by moderator gep13 on 5/30/2019.

OpenChrom® Community Edition is a free, extendable and easy-to-use software tool for chromatographic and mass spectrometric data analysis based on the Eclipse Rich Client Platform (RCP). Its focus is on handling mass spectrometry data files natively. Hence, mass spectrometric data generated, for example, by GC/MS, LC/MS, HPLC-MS, ICP-MS or MALDI-MS may be imported directly, without prior conversion, for subsequent visualization and evaluation. Aside from the support of various vendor data formats, data may also be imported in common formats such as NetCDF, csv or mzXML. All data format converters are provided as separate plug-ins which are not open source but free to use. Moreover, OpenChrom® offers a nicely adaptable graphical user interface.

OpenChrom® is tailored for data analysis purposes including processing, visualization and reporting. The implemented batch-processing features allow high-throughput evaluation. A continuously growing portfolio of processing and analysis procedures is provided. Extensions are welcome, as OpenChrom® is open source and uses a flexible approach, which allows others to implement their own methods, algorithms, filters, detectors or integrators.

Features

  • Vendor formats data import
  • Open formats data import
  • Export formats
  • Processing filters
  • Classifier
  • Background detection
  • Peak detection
  • Peak integration
  • Quantitation
  • Batch processing
  • Reporting
  • Office integration editor
  • Extensible with plugins

To install OpenChrom Community Edition, run the following command from the command line or from PowerShell:

C:\> choco install openchrom

To upgrade OpenChrom Community Edition, run the following command from the command line or from PowerShell:

C:\> choco upgrade openchrom

Files

Hide
  • tools\chocolateyInstall.ps1 Show
    $ErrorActionPreference = 'Stop'
    
    $toolsDir = "$(Split-Path -parent $MyInvocation.MyCommand.Definition)"
    
    $ZipArgs = @{
       PackageName   = $env:ChocolateyPackageName
       url           = 'https://sourceforge.net/projects/openchrom/files//REL-1.3.0/openchrom_win32.win32.x86_64_1.3.0.zip'
       checksum      = '0a84b9c0101c9db90c5672efa6de015d1a6a751d0b3822a92d3797a4df6994d3'
       ChecksumType  = 'sha256'
       UnzipLocation = Join-Path (Split-Path $toolsDir) "$env:ChocolateyPackageName$env:ChocolateyPackageVersion"
    }
    
    Install-ChocolateyZipPackage @ZipArgs
    
    $exes = Get-ChildItem $ZipArgs.UnzipLocation | 
                Where-Object {$_.psiscontainer} | 
                ForEach-Object {Get-ChildItem $_.fullname -filter "*.exe" -Recurse}
    
    foreach ($exe in $exes) {
       New-Item "$($exe.fullname).ignore" -Type file -Force | Out-Null
    }
    
    $GUI = (Get-ChildItem $ZipArgs.UnzipLocation -filter "$env:ChocolateyPackageName.exe").fullname
    New-Item "$GUI.gui" -Type file -Force | Out-Null
    
    $Linkname = "OpenChrom v$env:ChocolateyPackageVersion.lnk"
    $StartPrograms = Join-Path $env:ProgramData '\Microsoft\Windows\Start Menu\Programs'
    
    $ShortcutArgs = @{
       ShortcutFilePath = Join-Path $StartPrograms $Linkname
       TargetPath = $GUI
       IconLocation = Join-Path $toolsDir 'openchrom_icon.ico'
    }
    
    Install-ChocolateyShortcut @ShortcutArgs
    
  • tools\chocolateyUninstall.ps1 Show
    $ErrorActionPreference = 'Stop'
    
    # The installer doesn't remove previous versions, so there could be multiple "installs"
    $InstallDirs = Get-ChildItem $env:ChocolateyPackageFolder | 
                      Where-Object {($_.psiscontainer) -and ($_.name -match $env:ChocolateyPackageName)}
    
    # Delete all Start Menu links associated with OpenCrom
    foreach ($Dir in $InstallDirs) {
       $lnk = $Dir.Name -replace $env:ChocolateyPackageName,"$env:ChocolateyPackageName v"
       $StartShortcut = Join-Path $env:ProgramData "Microsoft\Windows\Start Menu\Programs\$lnk.lnk"
    
       if(Test-Path $StartShortcut) {
          Remove-Item $StartShortcut -Force
       }
    
       # Some files end up with paths > 256 characters and deletion fails.
       # Rename offensively long folders to fix this.
       Get-ChildItem (Join-Path $Dir.FullName "plugins") | 
                Where-Object{($_.psiscontainer) -and ($_.name.Length -gt 25)} |
                ForEach-Object {Rename-Item $_.FullName (get-random -max 10000) -Force}
    
       $null = Remove-Item $Dir.fullname -Recurse -Force
    }
    
    
    
  • tools\openchrom_icon.ico

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Dependencies

This package has no dependencies.

Package Maintainer(s)

Software Author(s)

  • Lablicate

Copyright

Copyright (c) 2016 by Lablicate GmbH

Tags

Version History

Version Downloads Last updated Status
OpenChrom Community Edition 1.1.0.20161129 460 Tuesday, November 29, 2016 approved
OpenChrom Community Edition 1.1.0 213 Monday, August 8, 2016 approved

Discussion for the OpenChrom Community Edition Package

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  • This discussion will carry over multiple versions. If you have a comment about a particular version, please note that in your comments.
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  • Tell us what you love about the package or OpenChrom Community Edition, or tell us what needs improvement.
  • Share your experiences with the package, or extra configuration or gotchas that you've found.
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